PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 318aa    MW: 35417.9 Da    PI: 6.2378
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006054.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30142199359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers +dp+v+++tY+ eHnh+
  Aco006054.1 142 DLWSWRKYGQKPIKGSPYPRGYYRCSSSkGCVARKQVERSPTDPTVLVVTYTAEHNHP 199
                  99************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-30126201IPR003657WRKY domain
PROSITE profilePS5081132.891135201IPR003657WRKY domain
SuperFamilySSF1182904.84E-26136201IPR003657WRKY domain
SMARTSM007744.4E-36140200IPR003657WRKY domain
PfamPF031063.9E-25142199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVNNNWDWD LNAVVRSCCF STPPAVTTFD PFPLLPTPVS EEEFANEEKG ELLLLSEIMR  60
GDQVSLVEHD ELCESFLFDI DHEKLFQKPQ PVVSFSTTTT LKEQSQRSTH QPLARSPRPK  120
RSQKKQHKRV VCHVPDDGLS PDLWSWRKYG QKPIKGSPYP RGYYRCSSSK GCVARKQVER  180
SPTDPTVLVV TYTAEHNHPM PTHRNSLAGT TRQKFPPPSP PPPPPPVSSS VSNCNMPYWS  240
PNSLSAEEVV FSPIATSTAS GRKDLGEEMD VDDMLFMGAD GMSDAASMEP FLMEKVGFGS  300
PFLCSRDMVG HRQSCSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181392011677Probable WRKY transcription factor 4
2lex_A1e-181392011677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0RKC73e-63M0RKC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22020_0017e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-51WRKY family protein